| TransferMessengerRna Class |
Transfer messenger RNA; tmRNA acts as a tRNA first, and then as an mRNA that encodes a peptide tag;
the ribosome translates this mRNA region of tmRNA and attaches the encoded peptide tag to the
C-terminus of the unfinished protein; this attached tag targets the protein for destruction or proteolysis.
Inheritance HierarchyNamespace: Bio.IO.GenBank
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
SyntaxThe TransferMessengerRna type exposes the following members.
Constructors| Name | Description | |
|---|---|---|
 | TransferMessengerRna(String) |
Creates new TransferMessengerRNA feature item with the specified location.
Note that this constructor uses LocationBuilder to construct location object from the specified
location string.
|
| TransferMessengerRna(ILocation) |
Creates new TransferMessengerRNA feature item from the specified location.
|
Properties| Name | Description | |
|---|---|---|
 | Key |
Gets the key for this item. These are not necessarily unique within a list,
which is why this is a property of an object to be included in a list, rather than
omitting this as a property and using a dictionary instead of a list.
(Inherited from FeatureItem.) |
| Label |
A label used to permanently tag a feature.
(Inherited from FeatureItem.) |
| Location |
Gets the location of this feature in the sequence.
This may also refers to other genbank files.
For example,
join(100..200,J00194.1:1..150)
In this example location specifies joining of bases from 100 to 200 from the sequence
in which this location data present and bases from 1 to 150 from the sequence who's
accession number is J00194.1.
(Inherited from FeatureItem.) |
| Qualifiers |
Gets the dictionary of attributes.
(Inherited from FeatureItem.) |
| TagPeptide |
Base location encoding the polypeptide for proteolysis tag of tmRNA and its termination codon.
|
Methods| Name | Description | |
|---|---|---|
| Clone |
Creates a new TransferMessengerRNA that is a copy of the current TransferMessengerRNA.
|
| Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) |
 | Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) |
| GetHashCode | Serves as the default hash function. (Inherited from Object.) |
| GetQualifier |
Returns list of qualifier values for the specified qualifier name.
(Inherited from FeatureItem.) |
| GetSingleBooleanQualifier |
Returns bool value indicating whether the specified qualifier is there in the feature or not.
(Inherited from FeatureItem.) |
| GetSingleTextQualifier |
Returns qualifier value for the specified qualifier name.
Note: This method should be used to get the text value of a
qualifier which appears only once in a feature.
(Inherited from FeatureItem.) |
| GetSubFeatures |
Gets the sub features depending on the location information.
(Inherited from FeatureItem.) |
| GetSubSequence(ISequence) |
Returns a new sequence from the specified sequence which contains bases of this feature as specified by
the location property of this feature.
(Inherited from FeatureItem.) |
| GetSubSequence(ISequence, DictionaryString, ISequence) |
Returns a sequence which contains bases from the specified sequences as specified by this feature location.
If the location contains accession then the sequence from the referredSequences which matches the
accession of the location will be considered.
For example,
If a location is "join(100..200, J00089.1:10..50, J00090.2:30..40)"
bases from 100 to 200 will be taken from the parent sequence and referredSequences will
be searched for the J00089.1 and J00090.2 accession if found then those sequences will be considered
for constructing the output sequence.
If the referred sequence is not found in the referredSequences then an exception will occur.
(Inherited from FeatureItem.) |
| GetType | Gets the Type of the current instance. (Inherited from Object.) |
| MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) |
| SetSingleBooleanQualifier |
Sets the value for the specified qualifier name.
Note: This method should be used to add a qualifier which
appears only once in a feature and whose value is none.
(Inherited from FeatureItem.) |
| SetSingleTextQualifier |
Sets the value for the specified qualifier name.
Note: This method should be used to set the text value of a
qualifier which appears only once in a feature.
(Inherited from FeatureItem.) |
| ToString | Returns a string that represents the current object. (Inherited from Object.) |
See Also