DeltaAlignmentParser Class

This parser reads from a source of text that contains DeltaAlignments and converts the data to in-memory DeltaAlignment objects.

Inheritance Hierarchy

SystemObject
Bio.UtilDeltaAlignmentParser

Namespace: Bio.Util
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

public sealed class DeltaAlignmentParser : IDisposable

Public NotInheritable Class DeltaAlignmentParser
	Implements IDisposable

public ref class DeltaAlignmentParser sealed : IDisposable

[<SealedAttribute>]
type DeltaAlignmentParser =  
    class
        interface IDisposable
    end

The DeltaAlignmentParser type exposes the following members.

Constructors

	Name	Description
	DeltaAlignmentParser	Initializes a new instance of the DeltaAlignmentParser class by loading the specified filename.

Properties

	Name	Description
	QueryParser	Gets the query parser.

Methods

	Name	Description
	Dispose	Disposes the underlying stream.
	Dispose(Boolean)	Dispose the stream.
	Equals	Determines whether the specified object is equal to the current object. (Inherited from Object.)
	GetDeltaAlignmentAt	Gets the DeltaAlignment at specified position of the file.
	GetHashCode	Serves as the default hash function. (Inherited from Object.)
	GetPositions	Gets the position of DeltaAlignments in the specified file.
	GetQuerySeqIdAt	Gets the query sequence id in the DeltaAlignment at specified position.
	GetQuerySeqIds	Gets Delta alignment id and query sequence ids pairs.
	GetType	Gets the Type of the current instance. (Inherited from Object.)
	Parse	Returns an IEnumerable of DeltaAlignment in the file being parsed.
	ParseFrom	Starts parsing of delta alignments from the specified position of the file.
	ToString	Returns a string that represents the current object. (Inherited from Object.)