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GZipSequenceParserT, TItem Class
.GZ based ISequenceParser
Inheritance Hierarchy
SystemObject
  Bio.IOGZipParserT, TItem
    Bio.IOGZipSequenceParserT, TItem
      Bio.IOGZipFastAParser
      Bio.IOGZipFastQParser

Namespace: Bio.IO
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
Syntax
public class GZipSequenceParser<T, TItem> : GZipParser<T, TItem>, 
	IParserWithAlphabet<TItem>, IParser<TItem>, IParser
where T : class, new(), Object, IParserWithAlphabet<TItem>

Type Parameters

T
Parser type
TItem
Item type

The GZipSequenceParserT, TItem type exposes the following members.

Constructors
  NameDescription
Public methodGZipSequenceParserT, TItem
Initializes a new instance of the GZipSequenceParserT, TItem class
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Properties
  NameDescription
Public propertyAlphabet
Gets or sets the alphabet to use for parsed ISequence objects. If this is not set, the alphabet will be determined based on the file being parsed.
Public propertyDescription
Gets the description of the parser being implemented. This is intended to give the developer some information of the parser.
(Inherited from GZipParserTP, T.)
Public propertyName
Gets the name of the parser being implemented. This is intended to give the developer name of the parser.
(Inherited from GZipParserTP, T.)
Public propertySupportedFileTypes
Gets the file extensions that the parser supports. If multiple extensions are supported then this property will return a string containing all extensions with a ',' delimited.
(Inherited from GZipParserTP, T.)
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Methods
  NameDescription
Public methodCanProcessFile
Initializes a new instance of the FastAParser class by loading the specified filename and ensuring that it ends with ".gz"
(Inherited from GZipParserTP, T.)
Public methodEquals
Determines whether the specified object is equal to the current object.
(Inherited from Object.)
Protected methodFinalize
Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection.
(Inherited from Object.)
Public methodGetHashCode
Serves as the default hash function.
(Inherited from Object.)
Public methodGetType
Gets the Type of the current instance.
(Inherited from Object.)
Protected methodMemberwiseClone
Creates a shallow copy of the current Object.
(Inherited from Object.)
Public methodParse
Parses a list of biological sequence texts from a given stream.
(Inherited from GZipParserTP, T.)
Public methodParseOne
Parse a single data sequence from the file.
(Inherited from GZipParserTP, T.)
Public methodToString
Returns a string that represents the current object.
(Inherited from Object.)
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Fields
See Also