| IQualitativeSequence Methods |
The IQualitativeSequence type exposes the following members.
Methods| Name | Description | |
|---|---|---|
 | GetComplementedSequence |
Return a sequence representing the complement of this sequence.
(Inherited from ISequence.) |
| GetEncodedQualityScore |
Gets the encoded quality score found at the specified index if within bounds. Note that the index value start at 0.
|
| GetEncodedQualityScores |
Gets the encoded quality scores.
|
| GetEnumerator | Returns an enumerator that iterates through the collection. (Inherited from IEnumerableByte.) |
| GetReverseComplementedSequence |
Return a sequence representing the reverse complement of this sequence.
(Inherited from ISequence.) |
| GetReversedSequence |
Return a sequence representing this sequence with the orientation reversed.
(Inherited from ISequence.) |
| GetSubSequence |
Return a sequence representing a range (subsequence) of this sequence.
(Inherited from ISequence.) |
| IndexOfNonGap |
Gets the index of first non gap symbol.
(Inherited from ISequence.) |
| IndexOfNonGap(Int64) |
Returns the position of the first item beyond startPos that does not
have a Gap symbol.
(Inherited from ISequence.) |
| LastIndexOfNonGap |
Gets the index of last non gap symbol.
(Inherited from ISequence.) |
| LastIndexOfNonGap(Int64) |
Gets the index of last non gap symbol before the specified end position.
(Inherited from ISequence.) |
Extension Methods| Name | Description | |
|---|---|---|
 | AppendByte(Byte) | Overloaded.
Yield an Enumeration of the list with the item appended to the end
(Defined by IEnumerableExtensions.) |
| AppendByte(IEnumerableByte) | Overloaded.
Yield a concatenation of the two Enumerable lists
(Defined by IEnumerableExtensions.) |
| ConvertToString |
Converts the sequence to a string.
(Defined by SequenceExtensions.) |
| ElementAtByte |
Returns the element at a specified index in a sequence.
(Defined by IEnumerableExtensions.) |
| ForEachByte(ActionByte) | Overloaded.
Calls an action on each element of a sequence. The action takes one argument: an element. It has no return value.
(Defined by IEnumerableExtensions.) |
| ForEachByte(ActionByte, Int32) | Overloaded.
Calls an action on each element of a sequence. The action takes two arguments: an element and the index of the element.
It has no return value.
(Defined by IEnumerableExtensions.) |
| IsMarkedAsReverseComplement |
This checks for a sequence marker to determine if the given ISequence was generated from
a reverse complement.
(Defined by SequenceExtensions.) |
| MarkAsReverseComplement |
This adds a key to the Metadata to indicate this is a reversed sequence
(Defined by SequenceExtensions.) |
| ShuffleByte |
Shuffles the elements of a sequence.
(Defined by IEnumerableExtensions.) |
| StringJoin | Overloaded.
Creates a string from a sequence of elements. No delimiter is used.
(Defined by IEnumerableExtensions.) |
| StringJoin(String) | Overloaded.
Creates a delimited string from a sequence of elements.
(Defined by IEnumerableExtensions.) |
| StringJoin(String, Int32, String) | Overloaded.
Creates a delimited string from a sequence of elements. At most maxLength elements will be used and "..." shows that more elements were in the list.
(Defined by IEnumerableExtensions.) |
| SubSequenceByte |
Take the items from a sequence starting with item # start (index 0) and contining for count items.
(Defined by IEnumerableExtensions.) |
| ToHashSetByte | Overloaded.
Creates a HashSet from a sequence. If the sequence is already a HashSet, a new HashSet is still created.
(Defined by IEnumerableExtensions.) |
| ToHashSetByte(IEqualityComparerByte) | Overloaded.
Creates a HashSet from a sequence. If the sequence is already a HashSet, a new HashSet is still created.
(Defined by IEnumerableExtensions.) |
| ToQueueByte |
Creates a Queue from a sequence. If the sequence is already a Queue, a new Queue is still created.
(Defined by IEnumerableExtensions.) |
See Also