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IPairwiseSequenceAligner Properties

The IPairwiseSequenceAligner type exposes the following members.

Properties
  NameDescription
Public propertyConsensusResolver
Gets or sets the object that will be used to compute the alignment's consensus.
(Inherited from ISequenceAligner.)
Public propertyDescription
Gets the description of the sequence alignment algorithm being implemented.This is intended to give developer some information of the alignment algorithm.
(Inherited from ISequenceAligner.)
Public propertyGapExtensionCost
Gets or sets value of GapExtensionCost The GapExtensionCost is the cost of extending an already existing gap. This is used for the affine gap model, not used for the linear gap model.
(Inherited from ISequenceAligner.)
Public propertyGapOpenCost
Gets or sets value of GapOpenCost The GapOpenCost is the cost of inserting a gap character into a sequence.
(Inherited from ISequenceAligner.)
Public propertyName
Gets the name of the sequence alignment algorithm being implemented. This is intended to give developer some information of the alignment algorithm.
(Inherited from ISequenceAligner.)
Public propertySimilarityMatrix
Gets or sets value of similarity matrix The similarity matrix determines the score for any possible pair of symbols that are encountered at a common location across the sequences being aligned.
(Inherited from ISequenceAligner.)
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