| NUCmerAttributes Class |
This class extends MUMmerAttributes and adds NUCmer specific attributes
required to run the NUCmer algorithm.
Inheritance HierarchySystemObject
Bio.Algorithms.AlignmentPairwiseAlignmentAttributes
Bio.Algorithms.MUMmerMUMmerAttributes
Bio.Algorithms.AlignmentNUCmerAttributes
Bio.Algorithms.AlignmentPairwiseAlignmentAttributes
Bio.Algorithms.MUMmerMUMmerAttributes
Bio.Algorithms.AlignmentNUCmerAttributes
Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
SyntaxThe NUCmerAttributes type exposes the following members.
Constructors| Name | Description | |
|---|---|---|
 | NUCmerAttributes |
Initializes a new instance of the NUCmerAttributes class.
|
Properties| Name | Description | |
|---|---|---|
 | Attributes |
Gets list of attributes
(Inherited from PairwiseAlignmentAttributes.) |
Methods| Name | Description | |
|---|---|---|
| Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) |
 | Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) |
| GetHashCode | Serves as the default hash function. (Inherited from Object.) |
| GetType | Gets the Type of the current instance. (Inherited from Object.) |
| MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) |
| ToString | Returns a string that represents the current object. (Inherited from Object.) |
Fields| Name | Description | |
|---|---|---|
  | BreakLength |
Describes number of bases to be extended before stopping alignment
|
| FixedSeparation |
Describes maximum fixed diagonal difference
|
| MaximumSeparation |
Describes maximum separation between the adjacent matches in clusters
|
| MinimumScore |
Describes Minimum Output Score
|
| SeparationFactor |
Describes Separation Factor
|
See Also