PairwiseAlignmentAttributes Class

This class implements IAlignmentAttributes interface and defines all the parameters required to run any pairwise algorithm.

Inheritance Hierarchy

SystemObject
Bio.Algorithms.AlignmentPairwiseAlignmentAttributes
Bio.Algorithms.MUMmerMUMmerAttributes

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

public class PairwiseAlignmentAttributes : IAlignmentAttributes

Public Class PairwiseAlignmentAttributes
	Implements IAlignmentAttributes

public ref class PairwiseAlignmentAttributes : IAlignmentAttributes

type PairwiseAlignmentAttributes =  
    class
        interface IAlignmentAttributes
    end

The PairwiseAlignmentAttributes type exposes the following members.

Constructors

	Name	Description
	PairwiseAlignmentAttributes	Initializes a new instance of the PairwiseAlignmentAttributes class.

Properties

	Name	Description
	Attributes	Gets list of attributes

Methods

	Name	Description
	Equals	Determines whether the specified object is equal to the current object. (Inherited from Object.)
	Finalize	Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.)
	GetHashCode	Serves as the default hash function. (Inherited from Object.)
	GetType	Gets the Type of the current instance. (Inherited from Object.)
	MemberwiseClone	Creates a shallow copy of the current Object. (Inherited from Object.)
	ToString	Returns a string that represents the current object. (Inherited from Object.)

Fields

	Name	Description
	GapExtensionCost	Describes cost of extending an already existing gap.
	GapOpenCost	Describes cost of inserting a gap character into a sequence.
	SimilarityMatrix	Describes matrix that determines the score for any possible pair of symbols