GenBankMetadata Class |
Namespace: Bio.IO.GenBank
The GenBankMetadata type exposes the following members.
Name | Description | |
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GenBankMetadata |
Default Constructor.
Creates GenBankMetadata instance.
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Name | Description | |
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Accession |
Accession is identifier assigned to each GenBank sequence record.
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BaseCount |
Summary of the number of occurrences of each base pair code
(a, c, t, g, and other) in the sequence.
This is obsolete and was removed from the GenBank flat-file
format in October 2003.
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Comments |
Cross-references to other sequence entries, comparisons to
other collections, notes of changes in LOCUS names, and other remarks.
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Contig |
provides information about how individual sequence records can be
combined to form larger-scale biological objects, such as chromosomes
or complete genomes. Rather than presenting actual sequence data, a
special join() statement provides the accession numbers and base pair
ranges of the underlying records which comprise the object.
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DbLink | Obsolete.
DBLink provides cross-references to resources that support the existence
a sequence record, such as the Project Database and the NCBI
Trace Assembly Archive.
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DbLinks |
DBLinks provides a list of cross-references to resources that support the existence
a sequence record, such as the Project Database and the NCBI
Trace Assembly Archive.
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DbSource |
DBSource provies reference to the GenBank record from which the protein
translation was obtained.
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Definition |
Gets or sets the definition.
Definition is a concise description of the sequence
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Features |
Containing information on portions of the sequence that code for
proteins and RNA molecules and information on experimentally determined
sites of biological significance.
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Keywords |
Short phrases describing gene products and other information about the sequence.
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Locus |
Gets or sets the locaus information.
Locus is a short mnemonic name for the entry, chosen to suggest the
sequence's definition
| |
Origin |
Specification of how the first base of the reported sequence is
operationally located within the genome. Where possible, this
includes its location within a larger genetic map.
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Primary |
Provides the reference to the primary GenBank files from which annotations
in this file are derived.
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Project |
The identifier of a project (such as a Genome Sequencing Project)
to which a GenBank sequence record belongs.
This is obsolete and was removed from the GenBank flat-file format
after Release 171.0 in April 2009.
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References |
Citations for all articles containing data reported in this entry.
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Segment |
Segment provides the information on the order in which this entry appears in a
series of discontinuous sequences from the same molecule.
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Source |
Source provides the common name of the organism or the name most frequently used
in the literature along with the taxonomic classification levels
| |
Version |
A compound identifier consisting of the primary accession number and
a numeric version number associated with the current version of the
sequence data in the record. This is followed by an integer key
(a "GI") assigned to the sequence by NCBI.
|
Name | Description | |
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Clone |
Creates a new GenBankMetadata that is a copy of the current GenBankMetadata.
| |
Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) | |
Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) | |
GetCitationsReferredInFeature |
Returns list of citation references in this metadata which are referred in the specified feature.
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GetCitationsReferredInFeatures |
Returns list of citation references in this metadata which are referred in features.
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GetFeatures(Int32, Int32) |
Returns the features which are partly or completely inside the specified range.
Note that the startPosition and endPosition are one based position.
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GetFeatures(String, Int32, Int32) |
Returns the features which are partly or completely inside the specified range
and belongs to specified accession.
Note that the startPosition and endPosition are one based position.
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GetHashCode | Serves as the default hash function. (Inherited from Object.) | |
GetType | Gets the Type of the current instance. (Inherited from Object.) | |
MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) | |
ToString | Returns a string that represents the current object. (Inherited from Object.) |