SequenceAligners Class

SequenceAligners class is an abstraction class which provides instances and lists of all Aligners currently supported by Bio.

Inheritance Hierarchy

SystemObject
Bio.Algorithms.AlignmentSequenceAligners

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

public static class SequenceAligners

Public NotInheritable Class SequenceAligners

public ref class SequenceAligners abstract sealed

[<AbstractClassAttribute>]
[<SealedAttribute>]
type SequenceAligners =  class end

The SequenceAligners type exposes the following members.

Properties

	Name	Description
	All	Gets the list of all aligners which is supported by the framework.
	MUMmer	Gets an instance of MUMmer3 class which implements the MUMmer algorithm for partial alignment
	NeedlemanWunsch	Gets an instance of NeedlemanWunschAligner class which implements the NeedlemanWunsch algorithm for global alignment.
	NUCmer	Gets an instance of NUCmer3 class which implements the NUCmer algorithm for alignment
	SmithWaterman	Gets an instance of SmithWatermanAligner class which implements the SmithWaterman algorithm for partial alignment