| SAMAlignedSequenceHeader Properties |
The SAMAlignedSequenceHeader type exposes the following members.
Properties| Name | Description | |
|---|---|---|
 | Bin |
Gets the Bin depending on the POS and CIGAR.
|
| CIGAR |
Extended CIGAR string.
|
| Flag |
SAM flags.
SAMFlags |
| ISize |
Inferred insert size.
|
| MapQ |
Mapping quality (phred-scaled posterior probability that the
mapping position of this read is incorrect).
|
| MPos |
One-based leftmost mate position of the clipped sequence.
|
| MRNM |
Mate reference sequence name.
|
| OptionalFields |
Optional fields.
|
| Pos |
One-based leftmost position/coordinate of the aligned sequence.
|
| QName |
Query pair name if paired; or Query name if unpaired.
|
| RefEndPos |
Gets one based alignment end position of reference sequence depending on CIGAR Value.
|
| RName |
Reference sequence name.
|
See Also