| NewickParser Class |
A NewickParser reads from a source of text that is formatted according to
the Newick notation flat file specification, and converts the data to
in-memory PhylogeneticTree object.
Documentation for the latest Newick file format can be found at
http://evolution.genetics.washington.edu/phylip/newicktree.html
http://en.wikipedia.org/wiki/Newick_format
Inheritance HierarchyNamespace: Bio.IO.Newick
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
SyntaxThe NewickParser type exposes the following members.
Constructors| Name | Description | |
|---|---|---|
 | NewickParser | Initializes a new instance of the NewickParser class |
Properties| Name | Description | |
|---|---|---|
 | Description |
Gets the description of Newick parser.
This is intended to give developers some information
of the parser class. This property returns a simple description of what the
NewickParser class achieves.
|
| Name |
Gets the type of Parser i.e NEWICK.
This is intended to give developers some information
of the parser class.
|
| SupportedFileTypes |
Gets a comma separated values of the possible
file extensions for a Newick file.
|
| TreeName |
Name for the tree when parsing. If not set, this will be
set to a default value of "PhylogeneticTree"
|
Methods| Name | Description | |
|---|---|---|
| Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) |
 | Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) |
| GetHashCode | Serves as the default hash function. (Inherited from Object.) |
| GetType | Gets the Type of the current instance. (Inherited from Object.) |
| InternalParse |
Internal parse method used to parse out the data from a low-level TextReader.
|
| MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) |
| Parse(Stream) |
Parses a Phylogenetic tree text from a reader into a PhylogeneticTree.
|
| Parse(StringBuilder) |
Parses a Phylogenetic tree text from a StringBuilder into a PhylogeneticTree.
|
| ToString | Returns a string that represents the current object. (Inherited from Object.) |
See Also