| SequenceStatistics Class |
SequenceStatistics is used to keep track of the number of occurrences of each symbol within
a sequence.
Inheritance HierarchyNamespace: Bio
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
SyntaxThe SequenceStatistics type exposes the following members.
Constructors| Name | Description | |
|---|---|---|
 | SequenceStatistics |
Constructs sequence statistics by iterating through a sequence.
|
Properties| Name | Description | |
|---|---|---|
 | Alphabet |
The alphabet used for the values in this statistics set
|
| SymbolCounts |
The set of values counted (so it can be enumerated easily)
|
| TotalCount |
The total number of elements counted in this statistics set
|
Methods| Name | Description | |
|---|---|---|
| Equals | Determines whether the specified object is equal to the current object. (Inherited from Object.) |
 | Finalize | Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.) |
| GetCount(Byte) |
Gets the number of occurrences of the specific sequence char. This method does not perform
any calculations to group counts of ambiguous symbols with corresponding unambiguous
symbols. So the minimum G-C content of a DNA sequence would be calculated as
GetCount('G') + GetCount('C') + GetCount('S')
|
| GetCount(Char) |
Gets the number of occurrences of a specific symbol. This method does not perform
any calculations to group counts of ambiguous symbols with corresponding unambiguous
symbols. So the minimum G-C content of a DNA sequence would be calculated as
GetCount('G') + GetCount('C') + GetCount('S')
|
| GetFraction(Byte) |
Gets the fraction of occurrences of a specific sequence char. This method does not perform
any calculations to group counts of ambiguous symbols with corresponding unambiguous
symbols. So the minimum G-C content of a DNA sequence would be calculated as
GetFraction('G') + GetFraction('C') + GetFraction('S')
|
| GetFraction(Char) |
Gets the fraction of occurrences of a specific symbol. This method does not perform
any calculations to group counts of ambiguous symbols with corresponding unambiguous
symbols. So the minimum G-C content of a DNA sequence would be calculated as
GetFraction('G') + GetFraction('C') + GetFraction('S')
|
| GetHashCode | Serves as the default hash function. (Inherited from Object.) |
| GetType | Gets the Type of the current instance. (Inherited from Object.) |
| MemberwiseClone | Creates a shallow copy of the current Object. (Inherited from Object.) |
| ToString |
Converts the sequence chars with its count to string.
(Overrides ObjectToString.) |
See Also