MultiWaySuffixTree Class

Represents an in-memory suffix tree. This implementation of ISuffix tree only works with Sequence class.

Inheritance Hierarchy

SystemObject
Bio.Algorithms.SuffixTreeMultiWaySuffixTree

Namespace: Bio.Algorithms.SuffixTree
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

public class MultiWaySuffixTree : ISuffixTree

Public Class MultiWaySuffixTree
	Implements ISuffixTree

public ref class MultiWaySuffixTree : ISuffixTree

type MultiWaySuffixTree =  
    class
        interface ISuffixTree
    end

The MultiWaySuffixTree type exposes the following members.

Constructors

	Name	Description
	MultiWaySuffixTree	Initializes a new instance of the MultiWaySuffixTree class with the specified sequence.

Properties

	Name	Description
	EdgesCount	Gets total number of edges in this suffix tree.
	MinLengthOfMatch	Gets or sets Minimum length of match required.
	Name	Gets Name of the suffix tree.
	NoAmbiguity	Gets or sets a value indicating whether it Matches basic symbols only.
	Sequence	Gets Sequence used to build the suffix tree.

Methods

	Name	Description
	Equals	Determines whether the specified object is equal to the current object. (Inherited from Object.)
	Finalize	Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.)
	GetHashCode	Serves as the default hash function. (Inherited from Object.)
	GetType	Gets the Type of the current instance. (Inherited from Object.)
	MemberwiseClone	Creates a shallow copy of the current Object. (Inherited from Object.)
	SearchMatches	Gets the matches where length is greater than or equal to the MinLengthOfMatch.
	SearchMatchesUniqueInReference	Gets the matches unique in reference sequence where length is greater than or equal to the MinLengthOfMatch.
	ToString	Returns a string that represents the current object. (Inherited from Object.)