PairwiseAlignedSequence Class

PairwiseAlignedSequence is a class containing the single aligned unit of pairwise alignment.

Inheritance Hierarchy

SystemObject
Bio.Algorithms.AlignmentAlignedSequence
Bio.Algorithms.AlignmentPairwiseAlignedSequence

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

public class PairwiseAlignedSequence : AlignedSequence

Public Class PairwiseAlignedSequence
	Inherits AlignedSequence

public ref class PairwiseAlignedSequence : public AlignedSequence

type PairwiseAlignedSequence =  
    class
        inherit AlignedSequence
    end

The PairwiseAlignedSequence type exposes the following members.

Constructors

	Name	Description
	PairwiseAlignedSequence	Initializes a new instance of the PairwiseAlignedSequence class.

Properties

	Name	Description
	Consensus	Gets or sets Consensus of FirstSequence and SecondSequence.
	FirstOffset	Gets or sets Offset of FirstSequence.
	FirstSequence	Gets or sets Alignment of First Sequence.
	Metadata	Gets information about the AlignedSequence, like score, offsets, consensus, etc.. (Inherited from AlignedSequence.)
	Score	Gets or sets Score of the alignment.
	SecondOffset	Gets or sets Offset of SecondSequence.
	SecondSequence	Gets or sets Alignment of Second Sequence.
	Sequences	Gets list of sequences involved in the alignment. (Inherited from AlignedSequence.)

Methods

	Name	Description
	Equals	Determines whether the specified object is equal to the current object. (Inherited from Object.)
	Finalize	Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.)
	GetHashCode	Serves as the default hash function. (Inherited from Object.)
	GetType	Gets the Type of the current instance. (Inherited from Object.)
	MemberwiseClone	Creates a shallow copy of the current Object. (Inherited from Object.)
	ToString	Converts the Consensus, First and Second sequences. (Overrides AlignedSequenceToString.)