| NucmerPairwiseAligner Properties |
The NucmerPairwiseAligner type exposes the following members.
Properties| Name | Description | |
|---|---|---|
 | BreakLength |
Gets or sets number of bases to be extended before stopping alignment.
|
| ConsensusResolver |
Gets or sets the consensus resolver attached with this aligner.
|
| Description |
Gets or Sets the description of the algorithm.
|
| FixedSeparation |
Gets or sets maximum fixed diagonal difference.
|
| ForwardOnly |
Align only the forward strands of each sequence.
|
| GapExtensionCost |
Gets or sets the Gap Extension Cost.
|
| GapOpenCost |
Gets or sets the Gap Open Cost.
|
 | IsAlign |
Gets or sets a value indicating whether to run Align or AlignSimple.
|
| LengthOfMUM |
Gets or sets minimum length of Match that can be considered as MUM.
|
| MaximumSeparation |
Gets or sets maximum separation between the adjacent matches in clusters.
|
| MaxMatch |
Use all anchor matches regardless of their uniqueness.
|
| MinimumScore |
Gets or sets minimum output score.
|
| Name |
Gets or Sets the name of the algorithm.
|
| ReverseOnly |
Align only the reverse strands of each sequence.
|
| SeparationFactor |
Gets or sets separation factor. Fraction equal to
(diagonal difference / match separation) where higher values
increase the insertion or deletion (indel) tolerance.
|
| SimilarityMatrix |
Gets or sets the similarity matrix associated with this aligner.
|
See Also