MultiSequenceAlignment Class

[Missing <summary> documentation for "T:Bio.Algorithms.Alignment.MultiSequenceAlignment"]

Inheritance Hierarchy

SystemObject
Bio.Algorithms.AlignmentMultiSequenceAlignment

Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

public class MultiSequenceAlignment

Public Class MultiSequenceAlignment

public ref class MultiSequenceAlignment

type MultiSequenceAlignment =  class end

The MultiSequenceAlignment type exposes the following members.

Constructors

	Name	Description
	MultiSequenceAlignment	Initializes a new instance of the MultiSequenceAlignment class
	MultiSequenceAlignment(IListISequence)	Initializes a new instance of the MultiSequenceAlignment class

Properties

Methods

	Name	Description
	Equals	Determines whether the specified object is equal to the current object. (Inherited from Object.)
	Finalize	Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.)
	GetHashCode	Serves as the default hash function. (Inherited from Object.)
	GetType	Gets the Type of the current instance. (Inherited from Object.)
	MemberwiseClone	Creates a shallow copy of the current Object. (Inherited from Object.)
	MultipleAlignmentScoreFunction	Calculate alignment score of a set of aligned sequences. The score is the average over all pairs of sequences of their pairwise alignment score.
	PairWiseScoreFunction	Calculate pairwise score of a pair of aligned sequences. The score is the sum over all position score given by the similarity matrix. The positions with only indels, e.g. gaps, are discarded. Gaps in the remaining columns are assessed affined score: g + w * e, where g is open penalty, and e is extension penalty.
	ToString	Returns a string that represents the current object. (Inherited from Object.)