| IClusterBuilder Interface |
Contract defined to implement class that creates clusters.
Takes list of maximum unique matches as input and creates clusters
Namespace: Bio.Algorithms.Alignment
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)
SyntaxThe IClusterBuilder type exposes the following members.
Properties| Name | Description | |
|---|---|---|
 | FixedSeparation |
Gets or sets maximum fixed diagonal difference
|
| MaximumSeparation |
Gets or sets maximum separation between the adjacent matches in clusters
|
| MinimumScore |
Gets or sets minimum output score
|
| ScoreMethod |
Gets or sets the method to use while calculating score of a cluster.
|
| SeparationFactor |
Gets or sets separation factor. Fraction equal to
(diagonal difference / match separation) where higher values
increase the insertion or deletion (indel) tolerance
|
Methods| Name | Description | |
|---|---|---|
 | BuildClusters(ListMatchExtension) |
Build the list of clusters for given MUMs
|
| BuildClusters(ListMatchExtension, Boolean) |
Build the list of clusters for given MUMs
|
See Also