DeltaAlignment Properties |
The DeltaAlignment type exposes the following members.
Name | Description | |
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DeltaReferencePosition |
Gets or sets the value of delta reference position
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Deltas |
Gets list of integers that pointing the insertion and
deletion indices
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Errors |
Gets or sets errors
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FirstSequenceEnd |
Gets or sets the end index of first sequence
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FirstSequenceStart |
Gets or sets the start index of first sequence
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Id |
Id for this Delta alignment.
Note: As file position is used as ID in case of comparative assembly steps, this value may vary from step to step.
For example: if 0 is the id for a delta alignment in 2nd step then the same delta alignment
can have 500 as id in 3rd step.
This change in id may happen due to the sorting of delta or ignoring some other delta alignments etc.
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IsReverseQueryDirection |
Returns TRUE if this is a REVERSE query sequence direction
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NonAlphas |
Gets or sets number of non alphabets encountered during alignment
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QueryDirection |
Gets or sets the query sequence direction FORWARD or REVERSE
When this is reverse, the second offsets will be reversed in output
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QuerySequence |
Gets query sequence id
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ReferenceSequence |
Gets reference sequence
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SecondSequenceEnd |
Gets or sets the end index of second sequence
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SecondSequenceStart |
Gets or sets the start index of second sequence
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SimilarityErrors |
Gets or sets similarity errors
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