Alphabets Class

Alphabets Class

The currently supported and built-in alphabets for sequence items.

Inheritance Hierarchy

SystemObject
BioAlphabets

Namespace: Bio
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

public static class Alphabets

Public NotInheritable Class Alphabets

public ref class Alphabets abstract sealed

[<AbstractClassAttribute>]
[<SealedAttribute>]
type Alphabets =  class end

The Alphabets type exposes the following members.

Properties

	Name	Description
	All	Gets the list of all Alphabets which are supported by the framework.

Methods

	Name	Description
	AutoDetectAlphabet	This methods loops through supported alphabet types and tries to identify the best alphabet type for the given symbols.
	CheckIsFromSameBase	Verifies if two given alphabets comes from the same base alphabet.
	GetAmbiguousAlphabet	Gets the ambiguous alphabet

Fields

	Name	Description
	AlphabetToBaseAlphabetMap	Mapping between an alphabet type and its corresponding base alphabet type.
	AmbiguousAlphabetMap	Mapping between an alphabet type and its corresponding ambiguous alphabet type.
	AmbiguousDNA	The Ambiguous DNA alphabet.
	AmbiguousProtein	The Ambiguous protein alphabet consisting of amino acids.
	AmbiguousRNA	The Ambiguous RNA alphabet.
	DNA	The DNA alphabet.
	Protein	The protein alphabet consisting of amino acids.
	RNA	The RNA alphabet.