| SAMDnaAlphabet Properties |
The SAMDnaAlphabet type exposes the following members.
Properties| Name | Description | |
|---|---|---|
 | A |
Gets A - Adenine.
(Inherited from DnaAlphabet.) |
| AC |
Gets Ambiguous symbol A-Adenine C-Cytosine.
(Inherited from AmbiguousDnaAlphabet.) |
| ACT |
Gets Ambiguous symbol A-Adenine C-Cytosine T-Thymine.
(Inherited from AmbiguousDnaAlphabet.) |
| Any |
Gets Ambiguous symbol Any.
(Inherited from AmbiguousDnaAlphabet.) |
| AT |
Gets Ambiguous symbol A-Adenine T-Thymine.
(Inherited from AmbiguousDnaAlphabet.) |
| C |
Gets C - Cytosine.
(Inherited from DnaAlphabet.) |
| Count |
Gets count of nucleotides.
(Inherited from DnaAlphabet.) |
| Dot |
Gets symbol "." (Space holder to represent Intron).
As per the Specification Version 0.1.2-draft (20090820) and 1.4-r985
In a split alignment "..." represents Intron.
|
| Equal |
Gets the SAM symbol "=" (Equal to reference symbol)
|
| G |
Gets G - Guanine.
(Inherited from DnaAlphabet.) |
| GA |
Gets Ambiguous symbol G-Guanine A-Adenine.
(Inherited from AmbiguousDnaAlphabet.) |
| Gap |
Gets Default Gap symbol.
(Inherited from DnaAlphabet.) |
| GAT |
Gets Ambiguous symbol G-Guanine A-Adenine T-Thymine.
(Inherited from AmbiguousDnaAlphabet.) |
| GC |
Gets Ambiguous symbol G-Guanine C-Cytosine.
(Inherited from AmbiguousDnaAlphabet.) |
| GCA |
Gets Ambiguous symbol G-Guanine C-Cytosine A-Adenine.
(Inherited from AmbiguousDnaAlphabet.) |
| GT |
Gets Ambiguous symbol G-Guanine T-Thymine.
(Inherited from AmbiguousDnaAlphabet.) |
| GTC |
Gets Ambiguous symbol G-Guanine T-Thymine C-Cytosine.
(Inherited from AmbiguousDnaAlphabet.) |
| HasAmbiguity |
Gets or sets a value indicating whether this alphabet has ambiguous character.
This alphabet does have ambiguous symbols.
(Inherited from DnaAlphabet.) |
| HasGaps |
Gets or sets a value indicating whether this alphabet has a gap character.
This alphabet does have a gap symbol.
(Inherited from DnaAlphabet.) |
| HasTerminations |
Gets or sets a value indicating whether this alphabet has termination character.
This alphabet does not have termination symbols.
(Inherited from DnaAlphabet.) |
| IsComplementSupported |
Gets or sets a value indicating whether this Complement is supported on this Alphabet.
This alphabet has support for complement.
(Inherited from DnaAlphabet.) |
| Item |
Gets the byte value of item at the given index.
(Inherited from DnaAlphabet.) |
| Name |
Gets or sets Friendly name for Alphabet type.
(Inherited from DnaAlphabet.) |
| T |
Gets T - Thymine.
(Inherited from DnaAlphabet.) |
| TC |
Gets Ambiguous symbol T-Thymine C-Cytosine.
(Inherited from AmbiguousDnaAlphabet.) |
See Also