CodingSequence Properties |
The CodingSequence type exposes the following members.
Name | Description | |
---|---|---|
Allele |
Name of the allele for the given gene.
All gene-related features (exon, CDS etc) for a given gene should share the same Allele qualifier value;
the Allele qualifier value must, by definition, be different from the Gene qualifier value; when used with
the variation feature key, the Allele qualifier value should be that of the variant.
| |
Citation |
Reference to a citation listed in the entry reference field.
| |
Codon |
Specifies a codon which is different from any found in the reference genetic code.
| |
CodonStart |
Indicates the offset at which the first complete codon of a coding feature can be found,
relative to the first base of that feature.
| |
DatabaseCrossReference |
Database cross-reference: pointer to related information in another database.
| |
EnzymeCommissionNumber |
Enzyme Commission number for enzyme product of sequence.
| |
Exception |
Indicates that the coding region cannot be translated using standard biological rules.
| |
Experiment |
A brief description of the nature of the experimental evidence that supports the feature
identification or assignment.
| |
Function |
Function attributed to a sequence.
| |
GeneSymbol |
Symbol of the gene corresponding to a sequence region.
| |
GeneSynonym |
Synonymous, replaced, obsolete or former gene symbol.
| |
GenomicMapPosition |
Genomic map position of feature.
| |
Inference |
A structured description of non-experimental evidence that supports the feature
identification or assignment.
| |
Key |
Gets the key for this item. These are not necessarily unique within a list,
which is why this is a property of an object to be included in a list, rather than
omitting this as a property and using a dictionary instead of a list.
(Inherited from FeatureItem.) | |
Label |
A label used to permanently tag a feature.
(Inherited from FeatureItem.) | |
Location |
Gets the location of this feature in the sequence.
This may also refers to other genbank files.
For example,
join(100..200,J00194.1:1..150)
In this example location specifies joining of bases from 100 to 200 from the sequence
in which this location data present and bases from 1 to 150 from the sequence who's
accession number is J00194.1.
(Inherited from FeatureItem.) | |
LocusTag |
A submitter-supplied, systematic, stable identifier for a gene and its associated
features, used for tracking purposes.
| |
Note |
Any comment or additional information.
| |
Number |
A number to indicate the order of genetic elements (e.g., exons or introns) in the 5' to 3' direction.
| |
OldLocusTag |
Feature tag assigned for tracking purposes.
| |
Operon |
Name of the group of contiguous genes transcribed into a single transcript to which that feature belongs.
| |
Product |
Name of the product associated with the feature, e.g. the mRNA of an mRNA feature,
the polypeptide of a CDS, the mature peptide of a mat_peptide, etc.
| |
ProteinId |
Protein identifier, issued by International collaborators. this qualifier consists of a stable ID
portion (3+5 format with 3 position letters and 5 numbers) plus a version number after the decimal point.
| |
Pseudo |
Indicates that this feature is a non-functional version of the element named by the feature key.
| |
Qualifiers |
Gets the dictionary of attributes.
(Inherited from FeatureItem.) | |
RibosomalSlippage |
During protein translation, certain sequences can program ribosomes to change to an alternative
reading frame by a mechanism known as ribosomal slippage.
| |
StandardName |
Accepted standard name for this feature.
| |
Translation |
Automatically generated one-letter abbreviated amino acid sequence derived from either
the universal genetic code or the table as specified in Transl_table qualifier and as
determined by exceptions in the Transl_except and Codon qualifiers.
| |
TranslationalExcept |
Translational exception: single codon the translation of which does not conform
to genetic code defined by Organism and Codon qualifier.
| |
TranslationTable |
Definition of genetic code table used if other than universal genetic code table.
| |
TransSplicing |
Indicates that exons from two RNA molecules are ligated in intermolecular
reaction to form mature RNA.
|