Location Class

Location Class

Location, holds the feature location information. This is the default implementation of the ILocation interface. This holds Start and End points of location. If in case location refers to some other sequence (for example, J00194.1:1..150) then the accession number information should be stored in the Accession property. Resolver property is used to resolve any ambiguity in the location start-data and end-data. By default this will be set to an instance of LocationResolver class.

Inheritance Hierarchy

SystemObject
Bio.IO.GenBankLocation

Namespace: Bio.IO.GenBank
Assembly: Bio.Core (in Bio.Core.dll) Version: 2.0.0.1 (2.0.0.1)

Syntax

C++

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public class Location : ILocation, IComparable

Public Class Location
	Implements ILocation, IComparable

public ref class Location : ILocation, 
	IComparable

type Location =  
    class
        interface ILocation
        interface IComparable
    end

The Location type exposes the following members.

Constructors

	Name	Description
	Location	Default constructor.

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Properties

	Name	Description
	Accession	Accession number of referred sequence.
	EndData	Gets or sets the end position data. All positions are one based.
	LocationEnd	Gets the end position of the location. Note that this is one based position.
	LocationStart	Gets the start position of the location. Note that this is one based position.
	Operator	Operator like none, complement, join and order.
	Resolver	Gets or sets the ILocationResolver instance used to resolve ambiguity in start-data and end-data
	Separator	Start and end positions separator.
	StartData	Gets or sets the start position data. All positions are one based.
	SubLocations	Sub locations.

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Methods

	Name	Description
	Clone	Creates a new Location that is a copy of the current Location.
	CompareTo	Compares this instance to a specified object and returns an indication of their relative values.
	Equals	Determines whether the specified object is equal to the current object. (Inherited from Object.)
	Finalize	Allows an object to try to free resources and perform other cleanup operations before it is reclaimed by garbage collection. (Inherited from Object.)
	GetHashCode	Serves as the default hash function. (Inherited from Object.)
	GetLeafLocations	Gets the leaf locations present in this location.
	GetSubSequence(ISequence)	Returns a sequence which contains bases from the specified sequences as specified by this location.
	GetSubSequence(ISequence, DictionaryString, ISequence)	Returns a sequence which contains bases from the specified sequences as specified by this location. If the location contains accession then the sequence from the referredSequences which matches the accession of the location will be considered. For example, If a location is "join(100..200, J00089.1:10..50, J00090.2:30..40)" bases from 100 to 200 will be taken from the sequence parameter and referredSequences will be searched for the J00089.1 and J00090.2 accession if found then those sequences will be considered for constructing the output sequence. If the referred sequence is not found in the referredSequences then an exception will occur.
	GetType	Gets the Type of the current instance. (Inherited from Object.)
	IsInEnd	Returns true if the specified position is within the end positions of the location.
	IsInRange	Returns true if the specified position is within the start and end positions of the location.
	IsInStart	Returns true if the specified position is within the start positions of the location.
	MemberwiseClone	Creates a shallow copy of the current Object. (Inherited from Object.)
	ToString	Returns a string that represents the current object. (Inherited from Object.)

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Reference

Bio.IO.GenBank Namespace